Cytoscape.js is an open-source graph theory (a.k.a. network) library written in JS. You can use Cytoscape.js for graph analysis and visualisation.
Cytoscape.js allows you to easily display and manipulate rich, interactive graphs. Because Cytoscape.js allows the user to interact with the graph and the library allows the client to hook into user events, Cytoscape.js is easily integrated into your app, especially since Cytoscape.js supports both desktop browsers, like Chrome, and mobile browsers, like on the iPad. Cytoscape.js includes all the gestures you would expect out-of-the-box, including pinch-to-zoom, box selection, panning, et cetera.
JSNetworkX is a port of the popular Python graph library NetworkX.
A dynamic, browser based visualization library. The library is designed to be easy to use, to handle large amounts of dynamic data, and to enable manipulation of and interaction with the data. The library consists of the components DataSet, Timeline, Network, Graph2d and Graph3d.